Users
Below you will find an alphabetical list of ontologies and institutions/groups using BFO. If you want to be added, please write to phismith@buffalo.edu.
Ontologies
- ACGT Master Ontology (ACGT MO)
- Additive Manufacturing Ontology (AMO)
- Adolescent Depression Ontology (ADO)
- African Wildlife Ontology (AWO)
- Algorithm-Implementation-Execution Ontology Design Pattern
- Animals in Context Ontology (ACO)
- Autism-DSM-ADI-R Ontology (ADAR)
- Alzheimer Disease Ontology (ADO)
- Adverse Event Reporting Ontology (AERO)
- AFO Foundational Ontology
- Actionable Intelligence Retrieval System (AIRS)
- Antimicrobial-Microorganism Ontology
- Apollo Structured Vocabulary (Apollo-SV)
- Bacterial Clinical Infectious Diseases Ontology (BCIDO)
- Behavior Perspective Model (BPM)
- Bank Ontology
- Battle Management Ontology (BMO)
- Behavior Change Intervention Ontology (BCIO)
- Beta Cell Genomics Application Ontology (BCGO)
- BioAssay Ontology
- Bioinformatics Web Service Ontology (OBIWS) (see also here)
- Biological Collections Ontology (BCO)
- Biomedical Ethics Ontology
- Biomedical Grid Terminology (BiomedGT, retired)
- Biomimetic Ontology
-
BioTop: a biomedical top-domain ontology
- BioTopLite2 (See also BioTopLite2 to BFO bridge)
- BIRNLex: controlled terminology for annotation of BIRN data sources
- Blood Ontology (BLO)
- Body Fluids Ontology (BFLO)
- Bone Dysplasia Ontology (BDO) (see also here)
- Cancer Cell Ontology (OncoCL)
- Cancer Chemoprevention Ontology (CanCo)
- Cardiovascular Disease Ontology (CVDO) (Winner of FOIS 2014 Ontology Competition)
- Cell Behavior Ontology (CBO)
- Cell Culture Ontology (CCONT)
- Cell Cycle Ontology
- Cell Expression, Localization, Development and Anatomy Ontology (CELDA)
- Cell Line Ontology (CLO)
- Cell Ontology: designed as a structured controlled vocabulary for cell types
- Cellular Microscopy Phenotype Ontology (CMPO)
- Chemical Analysis Ontology (CAO)
- Chemical Entities of Biological Interest (ChEBI)
- Chemical Information Ontology (CHEMINF)
- Chemical Methods Ontology (CHMO)
- CHRONIOUS Ontology Suite
- Cigarette Smoke Exposure Ontology (CSEO)
- Clinical Data Integration Model (CDMO)
- Clinical Narrative Temporal Relation Ontology (CNTRO)
- Clinical Trial Protocol Ontology (CTP-O)
- Clusters of Orthologous Groups (COG) Analysis Ontology (CAO)
- Cognition-Guided Surgery (CGS) Ontology
- Cognitive Paradigm Ontology (COGPO)
- Common Anatomy Reference Ontology (CARO): anatomical structures in all organisms
- Common Core Ontologies (CCO)
- Common Core Cyber Ontology (C3O)
- Communication Standards Ontology (CSO)
- Comparative Data Analysis Ontology (CDAO)
- Computational Neuroscience Ontology (CNO)
- Computer Aided Engineering Modeling Language (CAEML) Ontology
- Computer-Based Patient Record Ontology (CPRO)
- Conceptual Model Ontology (CMO)
- Core Data Integration Model (CDIM)
- Coriell Cell Line Ontology
- CPR Ontology for the Institute of Medicine's (IOM) Computer-Based Patient Record Ontology
- Data Model for Representing Biographical Information for Prosopography (Bio-CRM)
- Decision Ontology: Systems 2018, 6(4), 46.
- Diabetes mellitus Diagnosis Ontology (DDO)
- Diabetes Mellitus Treatment Ontology (DMTO)
- Digital Objects in Philosophy Ontology (DOPHO)
- Document Act Ontology (D-Acts)
- Drug Interaction Ontology (DIO)
- Drug Ontology (DrOn)
- Drug-drug Interaction Evidence Ontology (DIDEO)
- Drug-drug Interaction Ontology (DINTO)
- Eagle-I Research Resource Ontology (ERO)
- Electrocardiography Ontology (ECG)
- Eligibility Criteria Ontology (EC-O)
- Email Ontology
- Emotion Ontology (EMO): an ontology to describe affective phenomena
- ENanoMapper (ENM)
- Engineering-to-BioMimetic Ontology (E2BMO)
- Environment Ontology
- Epidemiology Ontology (EPO)
- Epilepsy and Seizure Ontology (EPSO)
- Event-Based Functional Behavior Ontology (EFBO)
- European Materials Modeling Ontology (EMMO)
- Event-Based Ontology for Historical Description (EOHD)
- Evolution Ontology (EO)
- Experimental Factor Ontology (EFO)
- (EXperimental ACTions) Biomedical Protocol Ontology (EXACT2)
- Exposé: an ontology for data mining experiments (see also here)
- eXtended Formal Ontology (XFO)
- Fission Yeast Phenotype Ontology (FYPO)
- Flower-Visiting Domain Ontology (FV), Known Flower-Visiting Group Domain Ontology (KFG), Flower-Visiting Behavior Application Ontology (FVB) and Observation-Date Application Ontology (OBD)
- Flybase Drosophila Anatomy Ontology (DAO)
- Flybase Drosophila Phenotype Ontology (FYPO)
- Feedback Intervention Ontology (FIO)
- Food Ontology (FoodOn)
- Foundational Model of Anatomy (FMA): See also (here)
- Framework for Semantic Workflow Composition in the Geology Domain
- Gastrointestinal Endoscopy Ontology (GIEO)
- General Information Model (GIM)
- Gene Ontology (GO)
- Gene Regulation Ontology (GRO)
- Genomic Epidemiology Ontology (GenEpiO)
- Genomic Feature and Variation Ontology (GFVO)
- Global Electronic Health Record Ontology (G-EHR-O)
- Gestalt: Federated Access to Cyber Observables for Detection of Targeted Attack
- Health Data Ontology Trunk (HDOT)
- Hemocomponents and Hemoderivatives Ontology (HEMONTO)
- Host Pathogen Interactions Ontology (HPO)
- Human Disease Ontology (DOID)
- Human Activity and Infrastructure Foundry (HAIF)
- Human Experience Realist Ontology (HERO)
- Human Interaction Network Ontology (HINO)
- Human Physiology Simulation Ontology (HuPSON) (see also here)
- Infectious Disease Ontology
- Information Artifact Ontology (IAO)
- Informed Consent Ontology (ICO)
- Innovative Capabilities of Additive Manufacturing (ICAM) Ontology
- Integrated Framework for Additively Manufactured Products (IFAMP) ontology
- Interaction Network Ontology (INO)
- Interdisciplinary Prostate Ontology Project (IPOP)
-
International Center for Food Ontology, Operability, Data and Semantics (IC-FOODS)
- uc_Eating: an ontology for the characterization of eating, drinking and otherwise consuming foods
- uc_FoodDrugInteractionOntology: an ontology for the characterization of interactions between foods and drugs
- uc_Milk: an ontology for the characterization of mammalian milks
- uc_Processing: an ontology for the characterization of processing methods and the products they engender
- uc_Sense: an ontology for the characterization of sensory perception, qualities, and attributes
- Intracranial Aneurysm (ICA) Ontology
- Knowledge Base Of Biomedicine (KaBOB)
- Knowledge Object Reference Ontology (KORO)
- Library of Integrated Network-based Cellular Signatures
- Lipid Ontology
- Literary Theme Ontology (LTO)
- Machine Learning Schema (ML-Schema) ontology
- Major histocompatibility complex (MHC) Restriction Ontology (MRO)
- Malaria Ontology (IDOMAL)
- Manufacturing Service Description Language (MSDL) ontology
- Manufacturing Supply Chain Ontology (MSCO)
- Medication Adherence Behavior Ontology (MAB-Ontology)
- Mental Disease Ontology (MFO-MD)
- Mental Functioning Ontology (MF)
- Microbiology Ontology (MicrO)
- Minimum Information Model for Patient Safety (MIMPS)
- miRNAO: an Ontology Unfolding the Domain of microRNAs
- Middle Layer Ontology for Clinical Care (MLOCC)
- Military Ontology
- Military Scenario Ontology (MSO)
- MIRO and IRbase: IT Tools for the Epidemiological Monitoring of Insecticide Resistance in Mosquito Disease Vectors
- Mission and Means Framework (MMF) Ontology
- Modal Relation Ontology (MRO)
- Modular Environmental Modeling Ontology (MEMOn)
- Model for Clinical Information (MCI)
- Mouse Pathology Ontology (MPATH)
- Name Reaction Ontology (RXNO)
- Nanoparticle Ontology (NPO): Ontology for Cancer Nanotechnology Research
- Neomark Oral Cancer Ontology (NEOMARK4)
- NeuroPsychological Testing Ontology (NPT)
-
Neuroscience Information Framework (see also here)
- Neuroscience Information Framework Cell Ontology (NIFCELL)
- Neuroscience Information Framework Dysfunction Ontology (NIFDYS)
- Neuroscience Information Framework Standard Ontology (NIFSTD): a collection of OWL modules covering distinct domains of biomedical reality
- Neural Electromagnetic Ontologies (NEMO): Ontology-based Tools for Representation and Integration of Event-related Brain Potentials
- Nanoparticles Impact on Human Cell morphology Ontology (NIHCO)
- Next-Generation Biobanking Ontology (NGBO)
- Next Generation Sequencing Ontology (NGSONTO)
- Non-Coding RNA Ontology (NCRO)
- NMR-Instrument Component of Metabolomics Investigations Ontology
- Ocular Disease Ontology (ODO)
- OncoCL-KB: Knowledgebase for Integration of Clinical and Molecular Cancer Data
- OBR Scolio (scoliosis) ontology
- OntoAlign++: A Combined Strategy for Improving Ontologies Alignment
- OntoForInfoScience
- Ontologies for Representing Surgical Procedure Models (OntoSPM)
- Ontologized Minimum Information About BIobank data Sharing (OMIABIS)
- Ontology for Adverse Events (OAE)
- Ontology for Autism Spectrum Disorder
- Ontology for Biobanking (OBIB)
- Ontology for Biomedical Investigations (OBI)
- Ontology of Card Sleights
- Ontology of Chinese Medicine for Rheumatism (OCMR)
- Ontology of Card Sleights
- Ontology for Computable Eligibility Criteria - Hepatitis C Virus (OCEC-HCV)
- Ontology for Dengue Fever (IDODEN)
- Ontology for Drug Discovery Investigations (DDI)
- Ontology for Energy Investigations (OEI)
- Ontology of Electronics (OOE)
- Ontology for Functionally Graded Materials (OFGM)
- Ontology for General Medical Science (OGMS)
- Ontology of Cardiovascular Drug Adverse Events (OCVDAE)
- Ontology of Genes and Genomes (OGG)
- Ontology for Genes and Genomes - Mouse (OGG-MM)
- Ontology of Genetic Disease Investigations (OGDI)
- Ontology fof Genetic Interval (OGI)
- Ontology of Genetic Susceptibility Factor (OGSF)
- Ontology for Guiding Appropriate Antibiotic Prescribing
- Ontology for Laparoscopic Surgeries (LapOntoSPM)
- Ontology of Microbial Phenotypes (OMP)
- Ontology for MIcroRNA Target Prediction (OMIT) (here)
- Ontology for Newborn Screening and Translational Research (ONSTR)
- Ontology for Next Generation Sequencing Experiments (NGS Ontology)
- Ontology-Based Operational Emergency Response (POLARISC)
- Ontology for Pain and Related Disability, Mental Health and Quality of Life (OPMQoL)
- Ontology for Periodontitis (PERIO)
- Ontology of Arthropod Circulatory Systems (OArCS)
- Ontology of Clinical Research (OCRe)
- Ontology for Nutritional Studies (ONS)
- Ontology for Parasite LifeCycle (OPL)
- Ontology for Thoracentesis
- Ontology of Biological and Clinical Statistics (OBCS)
- Ontology of Cancer Related Socialecological Variables (OCRSEV)
- Ontology for Cancer research variables (OCRV)
-
Ontology of Data Mining (OntoDM)
- OntoDM Core
- OntoDM KKD
- Ontology of Datatypes (OntoDT) (see also here)
- Ontology of Experimental Variables and Values (OOEVV)
- Ontology for Information Science (OntoforInforScience)
- Ontology of Medical Microbiology (OntoMic)
- Ontology of Medically Related Social Entities (OMRSE)
- Ontology of Social Participation (OPS)
- Ontology for Stem Cell Investigations (OSCI)
- Ontology of Vaccine Adverse Events (OVAE)
- Ontology-Based Data Access (OBDA)
- Ontology-Based eXtensible Data Model (OBX)
- Ontology-Driven Information System (ODIS)/Ontology-Driven Scenario Generator (ODSG)
- Operational Environment Ontology (OEO)
- Oral Health and Disease Ontology (OHD)
- Parasite Experiment Ontology (PEO)
- Part-Focused Manufacturing Process Ontology (PMPO)
- Patient Safetry Categorial Structure (PS-CAST)
- Petrochemical Ontology
- PGxO Pharmacogenomics Ontology
- Phenotypic Quality Ontology (PaTO): qualities of biomedical entities
- Plant Experimental Assay Ontology (PEAO)
- Plant Ontology (PO)
- Plastic Rock Deformation (PRD) ontology
- Pneumonia Ontology
- Ponte Ontology Platform (PONTE)
- POLARISC Emergency Response System Ontology
- Population and Community Ontology (PCO)
- Population Health Record (PopHR)
- Porifera Ontology (PORO)
- Pre-Eclampsia Ontology (PEO)
- PreOptique Platform for Integrated Pre-surgery Reports
- Prescription of Drugs Ontology (PRDO)
- Product Life Cycle Ontology for Additive Manufacturing
- Product Service System (PSS) Ontology
- Process and Observation Ontology (PO2)
- Proper Name Ontology (PNO)
- PROSPECT-IDR: Personalised Prediction of Infectious Disease Risk
- Protein-Ligand Interaction Ontology (PLIO)
- Protein Ontology (PRO): protein types and modifications classified on the basis of evolutionary relationships
- Provenir ontology for provenance modeling
- Public Safety and Emergency Management (PS/EM) Communications Ontology
- Quality of Service (QoS) Ontology
- Relations Ontology (RO)
- Reliability Assessment for Assembly Stations (RAAS) Ontology
- RNA Ontology (RnaO): RNA features, interactions and motifs
- Rock Plastic Deformation (RPD) ontology
- ROMAIN industrial maintenance ontology
- Role Ontology (ROLEO)
- Saliva Ontology (SALO)
- Schistosomiasis Process Ontology (IDOSCHISTO)
- Scientific Evidence and Provenance Information Ontology (SEPIO)
- Semantic Electronic Health Record (SEHR) Model from Linked2Safety (see also here and here)
- Senselab Ontology with applications to NeuronDB and BrainPharm
- Semanticscience Integrated Ontology (SIO)
- Semantic LAminated Composites Knowledge management System (SLACKS)
- Sentinel: Platform for Semantic Enrichment of Social Media Streams
- Sequence Ontology (SO): features and properties of nucleic sequences
- Situation Awareness Ontology (SAO)
- SMART Protocols: SeMAntic RepresenTation for Experimental Protocols
- Sketch Map Ontology
- Skin Physiology Ontology (SPO)
- Sleep Domain Ontology (SDO) (see also here)
- SNOMED CT (SCT) Standard Ontology
- Social Psychology Ontology (SPO)
- Software, Disabilities and Competences Ontology (SODIC)
- Software Ontology (SWO)
- Spatial Graph Adapter (SGA) Ontology Design Pattern
- Spatiotemporal Ontology for the Administrative Units of Switzerland (SONADUS)
- Special Nuclear Materials Detection Ontology (SNM-DO)
- Statistics Ontology (STATO)
- Subcellular Anatomy Ontology (SAO) of NCMIR
- Suggested Ontology for Pharmacogenomics (SO-Pharm)
- Surface Water Ontology (SWO)
- Survey Ontology
- Taxonomy for Rehabilitation of Knee Conditions (TRAK)
- Time Event Ontology (TEO)
- Trade-Space Analysis Tool for Constellations (TAT-C) ontology
- Translational Medicine Ontology (TMO)
- Tumour-Node-Metastasis Ontology (TNM-O)
- (Microbial) Typing Ontology (TypOn)
- United Nations SDG (Sustainable Development Goals) Ontology Framework
- United Nations System Document Ontology (ONTO-UNDO)
- Universal Core Semantic Layer
- UMass Engineering Core Ontologies
- Vaccination Informed Consent Ontology (VICO)
- Vaccine Ontology (VO)
- Visualized Emotion Ontology (VEO)
- Vital Sign Ontology (VSO)
- VIVO Ontology
- Volcanism Ontology (VO)
- Xenopus Anatomy Ontology (XAO)
- yOWL: ontology-driven knowledge base for yeast biologists
- Zebrafish Anatomical Ontology (ZAO): anatomical structures in D. rerio
Institutions, Groups and Projects
- Air Force Research Laboratory, Rome, New York
- Allotrope Foundation: Rethinking Scientific Data
- AstraZeneca - Clinical Information Science (see also here)
- Autodesk
- Berkeley Bioinformatics Open-Source Projects (BBOP)
- Biomedical Knowledge Engineering Lab at Seoul National University (SNU BiKE)
- Brain Operation Database (BODB)
- Center for e-Design
- CTSAconnect
- CUBRIC
- Darwin Core (DwC) (see also here)
- DOQS: Data-Oriented Quality Solutions
- DSpace at NTNUA
- Dumontier Lab
- eagle-i Research Resource Ontology
- Ecole polytechnique federale de Lausanne (EPFL)
- Elsevier Smart Content Strategy
- eNanoMapper
- EuPath Ontology
- Extensible Neuroimaging Archive Toolkit (XNAT)
- Good Ontology Design (GoodOD)
- HIGHFLEET
- Influenza Research Database (IRD)
- Institute for Defense Analysis
- INRIA Lorraine Research Unit
- Japan Advanced Institute of Science and Technology (JAIST)
- Johns Hopkins University Applied Physics Lab
- Kobe University, Graduate School of Medicine, Department of Sociomedical Informatics
- L3 Data Tactics Corporation (see also here)
-
Language and Computing
Bought by Nuance - Medical University Graz - Institute of Medical Informatics, Statistics and Documentation
- National Center for Multi-Source Information Fusion\
- Ontology Research Group at the New York State Center of Excellence in Bioinformatics & Life Sciences
- Ontology, Logic and Technology Unit
- Qualitative Spatiotemporal Reasoning Unit
- Referent Tracking Unit
- TRADOC Operational Environment Center
- SAIC
- OntoCAT
- OntoCOG
- OntoMaton
- openEHR
- Open Access Journals Integrated service System Project (GoOA)
- Open PHACTS
- OSTHUS
- Praxis: EMR research on interoperability and query of clinical records
- REMINE
- Saitama University - Faculty of Liberal Arts (see also here)
- Science Applications International Corporation (SAIC)
- Science Commons - Neurocommons
- Securboration
- Skeletome
- SMART Protocols
- U.S. Geological Survey (USGS) - Center of Excellence for Geospatial Information Science (CEGIS)
- University of Arkansas, Biomedical Informatics, Medical Center, Little Rock
- University of Augsburg - Computer Science - Software Methodologies for Distributed Systems
- University of South Alabama - School of Computing - South Biomedical Informatics (SBI) Research Group (see also here)
- University of Texas Southwestern Medical Center (see also here)
- University of Washington - Structural Informatics Group (SIG)
- Virus Pathogen Resource (ViPR)
-
VIVO: An interdisciplinary national network enabling collaboration and discovery between scientists across all disciplines
(see also here) - Volley: AI-powered learning hub
